Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2002214..2002485 | Replicon | chromosome |
| Accession | NZ_CP054388 | ||
| Organism | Escherichia coli strain 1517k | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2002252..2002354 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2002214..2002485 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E2126_RS09375 | 1999371..2000810 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E2126_RS09380 | 2000928..2001164 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| E2126_RS09385 | 2001269..2001460 | + | 192 | WP_001296140.1 | YebW family protein | - |
| E2126_RS09390 | 2001461..2002117 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 2002214..2002485 | + | 272 | - | - | Antitoxin |
| - | 2002252..2002354 | - | 103 | - | - | Toxin |
| E2126_RS09395 | 2002513..2002854 | - | 342 | WP_000976484.1 | YebY family protein | - |
| E2126_RS09400 | 2002867..2003739 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| E2126_RS09405 | 2003743..2004117 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| E2126_RS09410 | 2004256..2004486 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E2126_RS09415 | 2004588..2005244 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| E2126_RS09420 | 2005268..2005930 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159571 NZ_CP054388:c2002354-2002252 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT159571 NZ_CP054388:2002214-2002485 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
