Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2664712..2664983 | Replicon | chromosome |
| Accession | NZ_CP054371 | ||
| Organism | Escherichia coli strain SCU-316 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2664750..2664853 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2664712..2664983 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE41_RS12530 | 2661869..2663308 | + | 1440 | WP_001695829.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HPE41_RS12535 | 2663426..2663662 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HPE41_RS12540 | 2663767..2663958 | + | 192 | WP_001313035.1 | YebW family protein | - |
| HPE41_RS12545 | 2663959..2664615 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 2664712..2664983 | + | 272 | - | - | Antitoxin |
| - | 2664750..2664853 | - | 104 | - | - | Toxin |
| HPE41_RS12550 | 2665011..2665352 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HPE41_RS12555 | 2665365..2666237 | - | 873 | WP_000879287.1 | copper homeostasis membrane protein CopD | - |
| HPE41_RS12560 | 2666241..2666615 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HPE41_RS12565 | 2666754..2666984 | + | 231 | WP_000916760.1 | DNA polymerase III subunit theta | - |
| HPE41_RS12570 | 2667086..2667742 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| HPE41_RS12575 | 2667766..2668428 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159548 NZ_CP054371:c2664853-2664750 [Escherichia coli]
GGAAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGAAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT159548 NZ_CP054371:2664712-2664983 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTTCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTTCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
