Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 371150..371418 Replicon chromosome
Accession NZ_CP054368
Organism Escherichia coli strain SCU-115

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 371278..371380 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 371150..371418 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HPE48_RS01885 367703..368365 - 663 WP_000944249.1 exodeoxyribonuclease X -
HPE48_RS01890 368389..369045 - 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
HPE48_RS01895 369147..369377 - 231 WP_000916763.1 DNA polymerase III subunit theta -
HPE48_RS01900 369516..369890 + 375 WP_000255065.1 CopC domain-containing protein YobA -
HPE48_RS01905 369894..370766 + 873 WP_000879320.1 copper homeostasis membrane protein CopD -
HPE48_RS01910 370779..371120 + 342 WP_000976472.1 YebY family protein -
- 371150..371418 - 269 - - Antitoxin
- 371278..371380 + 103 - - Toxin
HPE48_RS01915 371515..372171 + 657 WP_000812745.1 protein-serine/threonine phosphatase -
HPE48_RS01920 372172..372363 - 192 WP_001296140.1 YebW family protein -
HPE48_RS01925 372468..372704 - 237 WP_001295499.1 DUF1480 family protein -
HPE48_RS01930 372821..374260 - 1440 WP_024186908.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T159503 NZ_CP054368:371278-371380 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT159503 NZ_CP054368:c371418-371150 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References