Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 621412..621680 | Replicon | chromosome |
| Accession | NZ_CP054363 | ||
| Organism | Escherichia coli strain SCU-171 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 621450..621552 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 621412..621680 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE49_RS03035 | 618569..620008 | + | 1440 | WP_174144383.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HPE49_RS03040 | 620126..620362 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HPE49_RS03045 | 620467..620658 | + | 192 | WP_001317886.1 | YebW family protein | - |
| HPE49_RS03050 | 620659..621315 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 621412..621680 | + | 269 | - | - | Antitoxin |
| - | 621450..621552 | - | 103 | - | - | Toxin |
| HPE49_RS03055 | 621710..622051 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HPE49_RS03060 | 622064..622936 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| HPE49_RS03065 | 622940..623314 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HPE49_RS03070 | 623453..623683 | + | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| HPE49_RS03075 | 623785..624441 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| HPE49_RS03080 | 624465..625127 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159471 NZ_CP054363:c621552-621450 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT159471 NZ_CP054363:621412-621680 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
