Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1757443..1757711 | Replicon | chromosome |
| Accession | NZ_CP054345 | ||
| Organism | Escherichia coli strain SCU-176 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1757571..1757673 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1757443..1757711 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE52_RS08270 | 1753996..1754658 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HPE52_RS08275 | 1754682..1755338 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HPE52_RS08280 | 1755440..1755670 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HPE52_RS08285 | 1755809..1756183 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HPE52_RS08290 | 1756187..1757059 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HPE52_RS08295 | 1757072..1757413 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 1757443..1757711 | - | 269 | - | - | Antitoxin |
| - | 1757571..1757673 | + | 103 | - | - | Toxin |
| HPE52_RS08300 | 1757808..1758464 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| HPE52_RS08305 | 1758465..1758656 | - | 192 | WP_024186842.1 | YebW family protein | - |
| HPE52_RS08310 | 1758761..1758997 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HPE52_RS08315 | 1759116..1760555 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159411 NZ_CP054345:1757571-1757673 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT159411 NZ_CP054345:c1757711-1757443 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
