Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2100361..2100504 | Replicon | chromosome |
| Accession | NZ_CP054294 | ||
| Organism | Citrobacter freundii strain IDR1800045912-01-00 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2100396..2100499 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2100361..2100504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS089_RS10065 | 2096808..2097470 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| HS089_RS10070 | 2097494..2098150 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| HS089_RS10075 | 2098257..2098487 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HS089_RS10080 | 2098631..2099005 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HS089_RS10085 | 2099009..2099881 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| HS089_RS10090 | 2099902..2100240 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2100361..2100504 | - | 144 | - | - | Antitoxin |
| - | 2100396..2100499 | + | 104 | - | - | Toxin |
| HS089_RS10095 | 2100653..2101294 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| HS089_RS10100 | 2101295..2101486 | - | 192 | WP_003034941.1 | YebW family protein | - |
| HS089_RS10105 | 2101589..2101825 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HS089_RS10110 | 2101926..2103347 | - | 1422 | WP_071681312.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159356 NZ_CP054294:2100396-2100499 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT159356 NZ_CP054294:c2100504-2100361 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
