Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2553146..2553291 | Replicon | chromosome |
| Accession | NZ_CP054285 | ||
| Organism | Klebsiella pneumoniae strain IDR1800050501-01-02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2553182..2553284 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2553146..2553291 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS091_RS12235 | 2548276..2550336 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HS091_RS12240 | 2550340..2550999 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HS091_RS12245 | 2551078..2551308 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HS091_RS12250 | 2551421..2551795 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HS091_RS12255 | 2551799..2552668 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HS091_RS12260 | 2552685..2553023 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 2553146..2553291 | - | 146 | - | - | Antitoxin |
| - | 2553182..2553284 | + | 103 | - | - | Toxin |
| HS091_RS12265 | 2553658..2553801 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HS091_RS12270 | 2553906..2554874 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HS091_RS12275 | 2555031..2555684 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| HS091_RS12280 | 2555681..2555872 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HS091_RS12285 | 2555970..2556209 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HS091_RS12290 | 2556325..2557759 | - | 1435 | Protein_2380 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159338 NZ_CP054285:2553182-2553284 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT159338 NZ_CP054285:c2553291-2553146 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
