Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 287329..287600 | Replicon | chromosome |
| Accession | NZ_CP054282 | ||
| Organism | Escherichia coli strain IDR1900005638-01-02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 287459..287562 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 287329..287600 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS093_RS01435 | 283884..284546 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HS093_RS01440 | 284570..285226 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HS093_RS01445 | 285328..285558 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HS093_RS01450 | 285697..286071 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| HS093_RS01455 | 286075..286947 | + | 873 | WP_047662685.1 | copper homeostasis membrane protein CopD | - |
| HS093_RS01460 | 286960..287301 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 287329..287600 | - | 272 | - | - | Antitoxin |
| - | 287459..287562 | + | 104 | - | - | Toxin |
| HS093_RS01465 | 287697..288353 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HS093_RS01470 | 288354..288545 | - | 192 | WP_000457842.1 | YebW family protein | - |
| HS093_RS01475 | 288650..288886 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HS093_RS01480 | 289004..290443 | - | 1440 | WP_181212156.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159312 NZ_CP054282:287459-287562 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT159312 NZ_CP054282:c287600-287329 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
