Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1362940..1363080 | Replicon | chromosome |
| Accession | NZ_CP054278 | ||
| Organism | Citrobacter freundii strain IDR1900015725-01-02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1362975..1363078 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1362940..1363080 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HS092_RS06470 | 1359387..1360049 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| HS092_RS06475 | 1360073..1360729 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| HS092_RS06480 | 1360836..1361066 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HS092_RS06485 | 1361210..1361584 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HS092_RS06490 | 1361588..1362460 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| HS092_RS06495 | 1362481..1362819 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 1362940..1363080 | - | 141 | - | - | Antitoxin |
| - | 1362975..1363078 | + | 104 | - | - | Toxin |
| HS092_RS06500 | 1363157..1364242 | - | 1086 | WP_057101944.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HS092_RS06505 | 1364211..1364483 | - | 273 | WP_072276910.1 | excisionase | - |
| HS092_RS06510 | 1364548..1364790 | - | 243 | WP_057101943.1 | DUF4060 family protein | - |
| HS092_RS06515 | 1364829..1365914 | - | 1086 | WP_182936642.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159296 NZ_CP054278:1362975-1363078 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT159296 NZ_CP054278:c1363080-1362940 [Citrobacter freundii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
