Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1907366..1907532 | Replicon | chromosome |
| Accession | NZ_CP054270 | ||
| Organism | Raoultella ornithinolytica strain OHMEATKPC2_NDM5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1907424..1907527 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1907366..1907532 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRV96_RS08925 (HRV96_08900) | 1902504..1904564 | + | 2061 | WP_134936367.1 | oligopeptidase B | - |
| HRV96_RS08930 (HRV96_08905) | 1904570..1905229 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| HRV96_RS08935 (HRV96_08910) | 1905308..1905538 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| HRV96_RS08940 (HRV96_08915) | 1905665..1906039 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| HRV96_RS08945 (HRV96_08920) | 1906043..1906912 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| HRV96_RS08950 (HRV96_08925) | 1906929..1907267 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 1907366..1907532 | - | 167 | - | - | Antitoxin |
| - | 1907424..1907527 | + | 104 | - | - | Toxin |
| HRV96_RS08955 (HRV96_08930) | 1907837..1907980 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| HRV96_RS08960 (HRV96_08935) | 1908101..1909072 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| HRV96_RS08965 (HRV96_08940) | 1909215..1909859 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| HRV96_RS08970 (HRV96_08945) | 1909865..1910056 | - | 192 | WP_004863962.1 | YebW family protein | - |
| HRV96_RS08975 (HRV96_08950) | 1910150..1910389 | - | 240 | WP_004863958.1 | YebV family protein | - |
| HRV96_RS08980 (HRV96_08955) | 1910504..1911937 | - | 1434 | WP_032717103.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159260 NZ_CP054270:1907424-1907527 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT159260 NZ_CP054270:c1907532-1907366 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
