Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1932054..1932198 | Replicon | chromosome |
| Accession | NZ_CP054254 | ||
| Organism | Klebsiella variicola strain FH-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1932090..1932192 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1932054..1932198 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HL854_RS09315 | 1927184..1929244 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| HL854_RS09320 | 1929248..1929907 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| HL854_RS09325 | 1929986..1930216 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| HL854_RS09330 | 1930330..1930704 | + | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| HL854_RS09335 | 1930708..1931577 | + | 870 | WP_173818115.1 | copper homeostasis membrane protein CopD | - |
| HL854_RS09340 | 1931594..1931932 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1932054..1932198 | - | 145 | - | - | Antitoxin |
| - | 1932090..1932192 | + | 103 | - | - | Toxin |
| HL854_RS09345 | 1932577..1932720 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| HL854_RS09350 | 1932824..1933792 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| HL854_RS09355 | 1933948..1934601 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| HL854_RS09360 | 1934598..1934789 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HL854_RS09365 | 1934887..1935126 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HL854_RS09370 | 1935242..1936675 | - | 1434 | WP_110184966.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159202 NZ_CP054254:1932090-1932192 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT159202 NZ_CP054254:c1932198-1932054 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
