Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2484234..2484502 | Replicon | chromosome |
| Accession | NZ_CP054236 | ||
| Organism | Escherichia coli strain EcPF5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2484362..2484464 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2484234..2484502 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HR070_RS11635 | 2480786..2481448 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HR070_RS11640 | 2481472..2482128 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| HR070_RS11645 | 2482231..2482461 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HR070_RS11650 | 2482600..2482974 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HR070_RS11655 | 2482978..2483850 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HR070_RS11660 | 2483863..2484204 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2484234..2484502 | - | 269 | - | - | Antitoxin |
| - | 2484362..2484464 | + | 103 | - | - | Toxin |
| HR070_RS11665 | 2484599..2485255 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| HR070_RS11670 | 2485256..2485447 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HR070_RS11675 | 2485552..2485788 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HR070_RS11680 | 2485906..2487345 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T159169 NZ_CP054236:2484362-2484464 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT159169 NZ_CP054236:c2484502-2484234 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
