Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PanAT/DUF4065(antitoxin) |
| Location | 4311177..4312165 | Replicon | chromosome |
| Accession | NZ_CP054224 | ||
| Organism | Escherichia coli strain EcPF16 | ||
Toxin (Protein)
| Gene name | panT | Uniprot ID | - |
| Locus tag | HR074_RS20935 | Protein ID | WP_014640052.1 |
| Coordinates | 4311177..4311563 (-) | Length | 129 a.a. |
Antitoxin (Protein)
| Gene name | panA | Uniprot ID | A0A0J5Z6D5 |
| Locus tag | HR074_RS20940 | Protein ID | WP_000458584.1 |
| Coordinates | 4311593..4312165 (-) | Length | 191 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HR074_RS20885 | 4306211..4307035 | + | 825 | WP_061352757.1 | DUF2303 family protein | - |
| HR074_RS20890 | 4307164..4307700 | + | 537 | WP_001689618.1 | 5'-deoxynucleotidase | - |
| HR074_RS20895 | 4307691..4307888 | + | 198 | Protein_4093 | hypothetical protein | - |
| HR074_RS20900 | 4308350..4308973 | + | 624 | WP_176321093.1 | ead/Ea22-like family protein | - |
| HR074_RS20905 | 4308975..4309166 | + | 192 | WP_039022221.1 | hypothetical protein | - |
| HR074_RS20910 | 4309169..4309558 | + | 390 | Protein_4096 | hypothetical protein | - |
| HR074_RS20915 | 4309751..4310026 | + | 276 | Protein_4097 | hypothetical protein | - |
| HR074_RS20920 | 4310026..4310598 | + | 573 | WP_176321094.1 | 3'-5' exoribonuclease | - |
| HR074_RS20925 | 4310635..4310916 | + | 282 | WP_001093917.1 | pyocin activator PrtN family protein | - |
| HR074_RS20930 | 4310964..4311137 | - | 174 | WP_000390072.1 | hypothetical protein | - |
| HR074_RS20935 | 4311177..4311563 | - | 387 | WP_014640052.1 | hypothetical protein | Toxin |
| HR074_RS20940 | 4311593..4312165 | - | 573 | WP_000458584.1 | SocA family protein | Antitoxin |
| HR074_RS20945 | 4312401..4312523 | - | 123 | WP_001300034.1 | hypothetical protein | - |
| HR074_RS20950 | 4312886..4313907 | - | 1022 | Protein_4104 | DUF2713 family protein | - |
| HR074_RS20955 | 4314226..4314741 | + | 516 | WP_176321095.1 | zinc uptake transcriptional repressor Zur | - |
| HR074_RS20960 | 4314783..4314992 | - | 210 | WP_001030593.1 | CsbD family protein | - |
| HR074_RS20965 | 4315108..4316433 | - | 1326 | WP_001301116.1 | MATE family efflux transporter DinF | - |
| HR074_RS20970 | 4316506..4317114 | - | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4287670..4317114 | 29444 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 129 a.a. Molecular weight: 14465.40 Da Isoelectric Point: 5.4833
>T159056 WP_014640052.1 NZ_CP054224:c4311563-4311177 [Escherichia coli]
VLAPTGPCNHLHVICNDPVYYPVNDCYCVLVVNISSIKDGVPHDPSCVLNSGDHRFIKHPSYVVYAEAIIWRVDNMVRKQ
RSGEISVHDDMPEATFNRILDGFDISDEVTPKNLKFKNKYCVSSIDDE
VLAPTGPCNHLHVICNDPVYYPVNDCYCVLVVNISSIKDGVPHDPSCVLNSGDHRFIKHPSYVVYAEAIIWRVDNMVRKQ
RSGEISVHDDMPEATFNRILDGFDISDEVTPKNLKFKNKYCVSSIDDE
Download Length: 387 bp
>T159056 NZ_CP069945:c3811762-3811439 [Escherichia coli]
ATGAAATTTCTACCTACAACAAATATGCGGGCGGCGAAGCCATGCCTGTCGCCCGTGACTATCTGGCAAATGCTACTTAG
TCGTCTGCTGGAACAGCATTATGGCCTGACACTAAACGATACACCTTTCTGTGATGAAACCGTCATACAGGAACATATCG
ATGCCGGTATCACTCTCGCTAATGCCATTAACTTTCTAGTGGAAAAGTACGAACTGGTTCGTATCGATCGCAGAGGGTTT
AGCTGGCAAGAACAAACGCCATATCTCACGATTATTGATATCATGAGGGCCCGTCGCGATCTGGGTTTAATGAATCGTAA
TTAG
ATGAAATTTCTACCTACAACAAATATGCGGGCGGCGAAGCCATGCCTGTCGCCCGTGACTATCTGGCAAATGCTACTTAG
TCGTCTGCTGGAACAGCATTATGGCCTGACACTAAACGATACACCTTTCTGTGATGAAACCGTCATACAGGAACATATCG
ATGCCGGTATCACTCTCGCTAATGCCATTAACTTTCTAGTGGAAAAGTACGAACTGGTTCGTATCGATCGCAGAGGGTTT
AGCTGGCAAGAACAAACGCCATATCTCACGATTATTGATATCATGAGGGCCCGTCGCGATCTGGGTTTAATGAATCGTAA
TTAG
Antitoxin
Download Length: 191 a.a. Molecular weight: 21973.21 Da Isoelectric Point: 6.0283
>AT159056 WP_000458584.1 NZ_CP054224:c4312165-4311593 [Escherichia coli]
MFCEEKVAQMAAYLLLKRGGRMAYLKLMKLLYLSNRQSILKHGRMIGEDSLYSMKFGPVMSNTLNLIRGKAEGIGDYWYN
LIETNGHNVSLRSDPREMDADEVFDELSRADIRILDEIYSRYGHMNRFDLANMTHLESVCPEWHDPGNSRKPIDLKEMLI
SEGKSEDEANRIIGKMEESQKLKEFSLQLS
MFCEEKVAQMAAYLLLKRGGRMAYLKLMKLLYLSNRQSILKHGRMIGEDSLYSMKFGPVMSNTLNLIRGKAEGIGDYWYN
LIETNGHNVSLRSDPREMDADEVFDELSRADIRILDEIYSRYGHMNRFDLANMTHLESVCPEWHDPGNSRKPIDLKEMLI
SEGKSEDEANRIIGKMEESQKLKEFSLQLS
Download Length: 573 bp
>AT159056 NZ_CP069945:c3812139-3811783 [Escherichia coli]
ATGAACTATCACTCAGAATCCGGTGCCATACCGGAGATTCCCCCCTGCCAGCATTGGGGGCTAAAGAGTACGATCACACC
CTGTTTTGGAGCTCGGCTGGTGCAAGAAGGCGACCGCCTGTATTTTCTTGCTGATCGGGCCGGATTTAACGGTGCTTTCT
GTGACGATGACGCGCTATACCTGGATCAGGCCTTTCCGTTTATTCTCAAACAACTGGAGCTGACACTCACCAGCGGAGAA
CTCTCCCCCCGCCATCAGCACTGTGTCACCCTCTATCACAACGGACTCACCTGCGAAGCCGATACGCTTGGTAGTTGTGG
CTACGTATACATCGCCATTTATCCCACTCAACGTTAA
ATGAACTATCACTCAGAATCCGGTGCCATACCGGAGATTCCCCCCTGCCAGCATTGGGGGCTAAAGAGTACGATCACACC
CTGTTTTGGAGCTCGGCTGGTGCAAGAAGGCGACCGCCTGTATTTTCTTGCTGATCGGGCCGGATTTAACGGTGCTTTCT
GTGACGATGACGCGCTATACCTGGATCAGGCCTTTCCGTTTATTCTCAAACAACTGGAGCTGACACTCACCAGCGGAGAA
CTCTCCCCCCGCCATCAGCACTGTGTCACCCTCTATCACAACGGACTCACCTGCGAAGCCGATACGCTTGGTAGTTGTGG
CTACGTATACATCGCCATTTATCCCACTCAACGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|