Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012692..2012963 | Replicon | chromosome |
| Accession | NZ_CP054224 | ||
| Organism | Escherichia coli strain EcPF16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012822..2012925 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012692..2012963 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HR074_RS09650 | 2009247..2009909 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HR074_RS09655 | 2009933..2010589 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| HR074_RS09660 | 2010691..2010921 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HR074_RS09665 | 2011060..2011434 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| HR074_RS09670 | 2011438..2012310 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| HR074_RS09675 | 2012323..2012664 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2012692..2012963 | - | 272 | - | - | Antitoxin |
| - | 2012822..2012925 | + | 104 | - | - | Toxin |
| HR074_RS09680 | 2013060..2013716 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| HR074_RS09685 | 2013717..2013908 | - | 192 | WP_001313035.1 | YebW family protein | - |
| HR074_RS09690 | 2014013..2014249 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HR074_RS09695 | 2014367..2015806 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159041 NZ_CP054224:2012822-2012925 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT159041 NZ_CP054224:c2012963-2012692 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
