Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2041636..2041907 | Replicon | chromosome |
| Accession | NZ_CP054191 | ||
| Organism | Escherichia coli strain TH9F11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2041766..2041869 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2041636..2041907 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRL54_RS09775 | 2038191..2038853 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HRL54_RS09780 | 2038877..2039533 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HRL54_RS09785 | 2039635..2039865 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRL54_RS09790 | 2040004..2040378 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HRL54_RS09795 | 2040382..2041254 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| HRL54_RS09800 | 2041267..2041608 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2041636..2041907 | - | 272 | - | - | Antitoxin |
| - | 2041766..2041869 | + | 104 | - | - | Toxin |
| HRL54_RS09805 | 2042004..2042660 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| HRL54_RS09810 | 2042661..2042852 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HRL54_RS09815 | 2042957..2043193 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HRL54_RS09820 | 2043311..2044750 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T158918 NZ_CP054191:2041766-2041869 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT158918 NZ_CP054191:c2041907-2041636 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
