Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2301702..2301973 | Replicon | chromosome |
| Accession | NZ_CP054169 | ||
| Organism | Escherichia coli strain STO_Bone1B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2301740..2301843 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2301702..2301973 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRS04_RS12100 | 2298859..2300298 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HRS04_RS12105 | 2300416..2300652 | + | 237 | WP_001295499.1 | YebV family protein | - |
| HRS04_RS12110 | 2300757..2300948 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HRS04_RS12115 | 2300949..2301605 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2301702..2301973 | + | 272 | - | - | Antitoxin |
| - | 2301740..2301843 | - | 104 | - | - | Toxin |
| HRS04_RS12120 | 2302001..2302342 | - | 342 | WP_000976492.1 | YebY family protein | - |
| HRS04_RS12125 | 2302355..2303227 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HRS04_RS12130 | 2303231..2303605 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HRS04_RS12135 | 2303744..2303974 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRS04_RS12140 | 2304076..2304732 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HRS04_RS12145 | 2304756..2305418 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T158867 NZ_CP054169:c2301843-2301740 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT158867 NZ_CP054169:2301702-2301973 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
