Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3134246..3134517 | Replicon | chromosome |
| Accession | NZ_CP054161 | ||
| Organism | Escherichia coli strain STO_Bone2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3134376..3134479 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3134246..3134517 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRS05_RS14915 | 3130801..3131463 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HRS05_RS14920 | 3131487..3132143 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HRS05_RS14925 | 3132245..3132475 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HRS05_RS14930 | 3132614..3132988 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| HRS05_RS14935 | 3132992..3133864 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| HRS05_RS14940 | 3133877..3134218 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 3134246..3134517 | - | 272 | - | - | Antitoxin |
| - | 3134376..3134479 | + | 104 | - | - | Toxin |
| HRS05_RS14945 | 3134614..3135270 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| HRS05_RS14950 | 3135271..3135462 | - | 192 | WP_235163887.1 | YebW family protein | - |
| HRS05_RS14955 | 3135567..3135803 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HRS05_RS14960 | 3135921..3137360 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T158822 NZ_CP054161:3134376-3134479 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT158822 NZ_CP054161:c3134517-3134246 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
