Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3429895..3429994 | Replicon | chromosome |
| Accession | NZ_CP054160 | ||
| Organism | Serratia fonticola strain HH13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3429899..3429994 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3429895..3429985 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9399_RS15695 (G9399_10795) | 3427164..3428231 | + | 1068 | WP_173409102.1 | RecT family recombinase | - |
| G9399_RS15700 (G9399_10790) | 3428235..3428414 | + | 180 | WP_173409101.1 | hypothetical protein | - |
| G9399_RS15705 (G9399_10785) | 3428485..3428763 | + | 279 | WP_173409100.1 | excisionase | - |
| G9399_RS15710 (G9399_10780) | 3428738..3429820 | + | 1083 | WP_221035182.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3429895..3429985 | + | 91 | - | - | Antitoxin |
| - | 3429899..3429994 | - | 96 | - | - | Toxin |
| G9399_RS15715 (G9399_10775) | 3430135..3430476 | - | 342 | WP_021806756.1 | YebY family protein | - |
| G9399_RS15720 (G9399_10770) | 3430546..3431427 | - | 882 | WP_186530783.1 | copper homeostasis membrane protein CopD | - |
| G9399_RS15725 (G9399_10765) | 3431431..3431814 | - | 384 | WP_024530221.1 | CopC domain-containing protein YobA | - |
| G9399_RS15730 (G9399_10760) | 3432137..3432655 | - | 519 | WP_021806759.1 | non-heme ferritin | - |
| G9399_RS15735 (G9399_10755) | 3433043..3433273 | + | 231 | WP_021181054.1 | DNA polymerase III subunit theta | - |
| G9399_RS15740 (G9399_10750) | 3433414..3434385 | - | 972 | WP_065685559.1 | prolyl aminopeptidase | - |
| G9399_RS15745 (G9399_10745) | 3434498..3434935 | - | 438 | WP_021806760.1 | TraR/DksA C4-type zinc finger protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3368464..3440419 | 71955 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 bp
>T158799 NZ_CP054160:c3429994-3429899 [Serratia fonticola]
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
Antitoxin
Download Length: 91 bp
>AT158799 NZ_CP054160:3429895-3429985 [Serratia fonticola]
AGATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTATGCA
AGATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTATGCA
