Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2107264..2107407 | Replicon | chromosome |
| Accession | NZ_CP054129 | ||
| Organism | Citrobacter portucalensis strain BY9F36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2107299..2107402 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2107264..2107407 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRV88_RS10125 (HRV88_10115) | 2103711..2104373 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| HRV88_RS10130 (HRV88_10120) | 2104397..2105053 | - | 657 | WP_008785043.1 | carbon-nitrogen hydrolase family protein | - |
| HRV88_RS10135 (HRV88_10125) | 2105160..2105390 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HRV88_RS10140 (HRV88_10130) | 2105534..2105908 | + | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| HRV88_RS10145 (HRV88_10135) | 2105912..2106784 | + | 873 | WP_235127353.1 | copper homeostasis membrane protein CopD | - |
| HRV88_RS10150 (HRV88_10140) | 2106805..2107143 | + | 339 | WP_032943770.1 | YebY family protein | - |
| - | 2107264..2107407 | - | 144 | - | - | Antitoxin |
| - | 2107299..2107402 | + | 104 | - | - | Toxin |
| HRV88_RS10155 (HRV88_10145) | 2107556..2108197 | + | 642 | WP_235127356.1 | protein-serine/threonine phosphatase | - |
| HRV88_RS10160 (HRV88_10150) | 2108198..2108389 | - | 192 | WP_003034941.1 | YebW family protein | - |
| HRV88_RS10165 (HRV88_10155) | 2108492..2108728 | - | 237 | WP_029139506.1 | YebV family protein | - |
| HRV88_RS10170 (HRV88_10160) | 2108829..2110217 | - | 1389 | WP_235127601.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T158746 NZ_CP054129:2107299-2107402 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT158746 NZ_CP054129:c2107407-2107264 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
