Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1781799..1781974 | Replicon | chromosome |
| Accession | NZ_CP054058 | ||
| Organism | Scandinavium goeteborgense strain CCUG 66741 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1781865..1781969 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1781799..1781974 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8O29_RS09275 | 1778255..1778914 | - | 660 | WP_125353807.1 | exodeoxyribonuclease X | - |
| A8O29_RS09280 | 1778965..1779630 | - | 666 | WP_125353808.1 | carbon-nitrogen hydrolase family protein | - |
| A8O29_RS09285 | 1779739..1779969 | - | 231 | WP_110512246.1 | DNA polymerase III subunit theta | - |
| A8O29_RS09290 | 1780108..1780482 | + | 375 | WP_110512245.1 | CopC domain-containing protein YobA | - |
| A8O29_RS09295 | 1780485..1781354 | + | 870 | WP_125353809.1 | copper homeostasis membrane protein CopD | - |
| A8O29_RS09300 | 1781371..1781709 | + | 339 | WP_168713849.1 | YebY family protein | - |
| - | 1781799..1781974 | - | 176 | - | - | Antitoxin |
| - | 1781865..1781969 | + | 105 | - | - | Toxin |
| A8O29_RS09305 | 1782449..1782592 | - | 144 | WP_148098776.1 | Ecr family regulatory small membrane protein | - |
| A8O29_RS09310 | 1782723..1783673 | - | 951 | WP_125353811.1 | VirK/YbjX family protein | - |
| A8O29_RS09315 | 1783837..1784481 | + | 645 | WP_125353812.1 | protein-serine/threonine phosphatase | - |
| A8O29_RS09320 | 1784482..1784673 | - | 192 | WP_125353813.1 | YebW family protein | - |
| A8O29_RS09325 | 1784772..1785011 | - | 240 | WP_110512237.1 | YebV family protein | - |
| A8O29_RS09330 | 1785127..1786569 | - | 1443 | WP_125353814.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T158612 NZ_CP054058:1781865-1781969 [Scandinavium goeteborgense]
GGCAAGGCGACTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 176 bp
>AT158612 NZ_CP054058:c1781974-1781799 [Scandinavium goeteborgense]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAGTCGCCTTGCCCTTTAAGAATAGATGACCATGCCAGGTTTTCCAGTCCGCGACAAAAGTGG
TCAGAAAAAAACCGTG
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAGTCGCCTTGCCCTTTAAGAATAGATGACCATGCCAGGTTTTCCAGTCCGCGACAAAAGTGG
TCAGAAAAAAACCGTG
