Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3114152..3114269 | Replicon | chromosome |
| Accession | NZ_CP054049 | ||
| Organism | Yersinia kristensenii strain 2012N-4030 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3114174..3114268 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3114152..3114269 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRD70_RS13880 | 3109758..3110714 | + | 957 | WP_049562769.1 | prolyl aminopeptidase | - |
| HRD70_RS13885 | 3110764..3110997 | - | 234 | WP_049562767.1 | DNA polymerase III subunit theta | - |
| HRD70_RS13890 | 3111391..3111900 | + | 510 | WP_004389930.1 | non-heme ferritin | - |
| HRD70_RS13895 | 3112292..3112678 | + | 387 | WP_032819543.1 | CopC domain-containing protein YobA | - |
| HRD70_RS13900 | 3112680..3113564 | + | 885 | WP_004389932.1 | copper homeostasis membrane protein CopD | - |
| HRD70_RS13905 | 3113661..3114002 | + | 342 | WP_004389933.1 | YebY family protein | - |
| - | 3114152..3114269 | - | 118 | - | - | Antitoxin |
| - | 3114174..3114268 | + | 95 | - | - | Toxin |
| HRD70_RS13910 | 3114344..3115453 | - | 1110 | WP_172986344.1 | tyrosine-type recombinase/integrase | - |
| HRD70_RS13915 | 3115428..3115697 | - | 270 | WP_050148866.1 | excisionase | - |
| HRD70_RS13920 | 3115846..3116268 | + | 423 | WP_172986345.1 | GNAT family N-acetyltransferase | - |
| HRD70_RS13925 | 3116285..3116485 | - | 201 | WP_172986346.1 | hypothetical protein | - |
| HRD70_RS13930 | 3116485..3117087 | - | 603 | WP_172986347.1 | hypothetical protein | - |
| HRD70_RS13935 | 3117295..3117486 | - | 192 | WP_172986348.1 | hypothetical protein | - |
| HRD70_RS13940 | 3117790..3118593 | - | 804 | WP_172986608.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3108580..3174677 | 66097 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T158588 NZ_CP054049:3114174-3114268 [Yersinia kristensenii]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 118 bp
>AT158588 NZ_CP054049:c3114269-3114152 [Yersinia kristensenii]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAACGTAGGCTTGTTCAGCCGTACTCTCTAAGAATAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAACGTAGGCTTGTTCAGCCGTACTCTCTAAGAATAG
