Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4140867..4140982 | Replicon | chromosome |
| Accession | NZ_CP054048 | ||
| Organism | Yersinia massiliensis strain 2011N-4075 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4140886..4140978 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4140867..4140982 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRD68_RS19745 | 4136031..4136183 | - | 153 | WP_155410999.1 | hypothetical protein | - |
| HRD68_RS19750 | 4136466..4137422 | + | 957 | WP_050285736.1 | prolyl aminopeptidase | - |
| HRD68_RS19755 | 4137468..4137701 | - | 234 | WP_108087672.1 | DNA polymerase III subunit theta | - |
| HRD68_RS19760 | 4138095..4138604 | + | 510 | WP_019210237.1 | non-heme ferritin | - |
| HRD68_RS19765 | 4138998..4139384 | + | 387 | WP_050080589.1 | CopC domain-containing protein YobA | - |
| HRD68_RS19770 | 4139386..4140270 | + | 885 | WP_108087673.1 | copper homeostasis membrane protein CopD | - |
| HRD68_RS19775 | 4140368..4140709 | + | 342 | WP_108087674.1 | YebY family protein | - |
| - | 4140867..4140982 | - | 116 | - | - | Antitoxin |
| - | 4140886..4140978 | + | 93 | - | - | Toxin |
| HRD68_RS19780 | 4141044..4141229 | - | 186 | Protein_3638 | tyrosine-type recombinase/integrase | - |
| HRD68_RS19785 | 4141324..4141725 | - | 402 | WP_108088266.1 | VOC family protein | - |
| HRD68_RS19790 | 4142553..4142873 | - | 321 | WP_050080592.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 bp
>T158574 NZ_CP054048:4140886-4140978 [Yersinia massiliensis]
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
TAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTAT
TCGGTCTTTTTTT
Antitoxin
Download Length: 116 bp
>AT158574 NZ_CP054048:c4140982-4140867 [Yersinia massiliensis]
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAACGTAGGCTTACTCAGCCGTACCCTTTAAG
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAACGTAGGCTTACTCAGCCGTACCCTTTAAG
