Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) parDE/ParE-YefM
Location 453225..453775 Replicon chromosome
Accession NZ_CP053923
Organism Defluviicoccus vanus strain Ben 114

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag HQ394_RS02075 Protein ID WP_190261811.1
Coordinates 453482..453775 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag HQ394_RS02070 Protein ID WP_190261810.1
Coordinates 453225..453482 (+) Length 86 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HQ394_RS02040 448686..448937 + 252 WP_190261806.1 type II toxin-antitoxin system ParD family antitoxin -
HQ394_RS02045 448934..449125 + 192 WP_190261807.1 type II toxin-antitoxin system RelE/ParE family toxin -
HQ394_RS02050 449208..450569 - 1362 WP_190260069.1 IS1182 family transposase -
HQ394_RS02055 450652..450798 + 147 WP_190263074.1 type II toxin-antitoxin system RelE/ParE family toxin -
HQ394_RS02060 450862..451986 - 1125 WP_190261808.1 DUF3800 domain-containing protein -
HQ394_RS02065 452006..452251 - 246 WP_190261809.1 type II toxin-antitoxin system ParD family antitoxin -
HQ394_RS02070 453225..453482 + 258 WP_190261810.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
HQ394_RS02075 453482..453775 + 294 WP_190261811.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
HQ394_RS02080 453841..454254 - 414 WP_190261812.1 hypothetical protein -
HQ394_RS02085 454381..455879 + 1499 Protein_405 IS21 family transposase -
HQ394_RS02090 455903..456753 + 851 Protein_406 ATP-binding protein -
HQ394_RS02095 457147..457413 - 267 WP_190261813.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 98 a.a.        Molecular weight: 11242.83 Da        Isoelectric Point: 6.6399

>T158284 WP_190261811.1 NZ_CP053923:453482-453775 [Defluviicoccus vanus]
VPRFQLSREAQSDLDAIADYTLERWGKEQARIYIDALHGRLTELAHQPLLGRKRDEVAEGLLCFPFESHVVFYALADFGI
AVVRVLHKRQDPFRHID

Download         Length: 294 bp

>T158284 NZ_CP069604:c988560-987904 [Dickeya dianthicola]
GTGGCCTATGACTACAGCGCCAATCTCAACCCGGAAAAGGCCCTTATCTGGCGCATTGTCCACCGGGACAACATCCCGTG
GATACTGGACAACGGTCTACACTGCGGCAACAGCCCGGTGCAGGCTGCAAACTGGATCAATATTGGTAACCCGGAGCTTA
TCAACAGACGCGCCGGGCACCCGGTGCCTGCCGGGGCGGGTGGTACGCTGCATGACTATGTGCCGTTTTACTTTACCCCC
TTCTCACCGATGCTGATGAATATCCACAGTGGGCGCGGCGGCATTAAGCAACGTCCCAACGAAGAAATCGTCATTCTGGT
CAGCAGCCTGCGACATGTGGCGATACAAAACGTCCCCTTCGTGTTTACCGACAGCCACGCCTACTATAATCTGGCGAATT
ACTATACCGATCTAAACAATCTGCACCGGATCGACTGGCCCATTTTACAGGCGCGGGATTTCCGTCGCGATCAGGACGAT
CTTGCCAAGTTTGAACGCTATCAGGCCGAGGCGTTAATCTGGCAGCACTGCCCCATCACGCTGCTGGTCGGGATGATTTG
TTACAACGATGGCGTCAGGTTACAATTAGAGCAATGGCTGTCGCAACGCAATCTGACAATGCCCGTTCACGCACGGGCCG
GGTGGTACTTCTCATGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9558.98 Da        Isoelectric Point: 5.2375

>AT158284 WP_190261810.1 NZ_CP053923:453225-453482 [Defluviicoccus vanus]
MRTMAALEAKNRFGELLDTAQREPVMIEKHGRAVAVMLSAEEYKELEALKLASLRSEIRKGLDDIEAGRTVDGDEAFRAL
RERLA

Download         Length: 258 bp

>AT158284 NZ_CP069604:c987907-986840 [Dickeya dianthicola]
ATGATGACATATACACAAGGCAATTTACTGGACGCGCCCGTGGAAGCACTGGTGAATACGGTGAATACCGTCGGTGTCAT
GGGTAAAGGCATCGCGCTGATGTTCAAAGAGCGCTTCCCCGATAATATGAAAGCCTATGCACTCGCCTGTAAACAAAAGC
AGGTGACGACTGGCAAAATGTTTATCACTGAAACCGACGAGCTGATGGGGCCACGCTGGATCGTCAACTTCCCTACCAAG
CAGCACTGGCGCGCCGACTCTCGCATGGAGTGGATTGAAGACGGCTTACAGGACTTACGTCGCTTTTTGATCGAAGAGAA
AGTGCAGTCCATCGCCATTCCTCCGCTGGGGGCGGGAAACGGCGGCCTGAACTGGTCGGACGTGCAGGCGCGGATTGAAT
CTGCGCTGGGCGACCTTCAGGACACGGAAATCCTGATTTATGAGCCTACCGAAAAATACCAAAACGTCGCCAAGAGTACC
GGCGTAAAAAAGCTCACCCCCGCCAGAGCGATGATCGCTGAACTGGTGCGCCGCTACTGGGTGCTGGGCATGGAGTGCAG
CCTGCTGGAAATCCAGAAGCTGGCATGGCTGTTACAACGCGCCATTGAACAGCACCAGCAGGAGGACGTGCTAAAACTGC
GGTTTGAGGCACACAATTATGGCCCGTATGCCCCCAACCTGAACCATCTGCTTAACGCGCTGGACGGCACCTATCTGAAG
GCCGAGAAACGCATCCCGGACAGCCAGCCGCTGGACGTGATCTGGTTTAACGATCGGGAAAAAGAACACATTAATCTCTG
GCTGAATAACGAGGCCAAAGCGTGGCTACCGGCGCTTGAGCAGGTCAGCCAGTTGATTGACGGCTTTGAATCGCCGTTTG
GTCTGGAGCTGCTGGCGACCGTTGACTGGCTGCTGACCCGAGGAGAGTGCCAGCCCACGCTGGATTCCGTGAAAGAGGGG
CTACACCAGTGGCCTGCCGGTGAACGCTGGGCCAGCCGTAAGATGAAGCTCTTTGACGACAAAAATCTGCAATTTGCCAT
AAACCGTGTCATGGAGTTCCATTGCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References