Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2044696..2044841 | Replicon | chromosome |
| Accession | NZ_CP053875 | ||
| Organism | Klebsiella pneumoniae strain KPN142 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2044732..2044834 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2044696..2044841 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY03_RS10090 (HPY03_10090) | 2039826..2041886 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HPY03_RS10095 (HPY03_10095) | 2041890..2042549 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HPY03_RS10100 (HPY03_10100) | 2042628..2042858 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HPY03_RS10105 (HPY03_10105) | 2042971..2043345 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HPY03_RS10110 (HPY03_10110) | 2043349..2044218 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| HPY03_RS10115 (HPY03_10115) | 2044235..2044573 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2044696..2044841 | - | 146 | - | - | Antitoxin |
| - | 2044732..2044834 | + | 103 | - | - | Toxin |
| HPY03_RS10120 (HPY03_10120) | 2045209..2045352 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HPY03_RS10125 (HPY03_10125) | 2045457..2046425 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HPY03_RS10130 (HPY03_10130) | 2046582..2047235 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HPY03_RS10135 (HPY03_10135) | 2047232..2047423 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HPY03_RS10140 (HPY03_10140) | 2047521..2047760 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HPY03_RS10145 (HPY03_10145) | 2047876..2049309 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T158213 NZ_CP053875:2044732-2044834 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT158213 NZ_CP053875:c2044841-2044696 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
