Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029001..2029146 | Replicon | chromosome |
| Accession | NZ_CP053862 | ||
| Organism | Klebsiella pneumoniae strain KP-Zhen | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029037..2029139 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029001..2029146 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GWF98_RS09630 | 2024131..2026191 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| GWF98_RS09635 | 2026195..2026854 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GWF98_RS09640 | 2026933..2027163 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GWF98_RS09645 | 2027276..2027650 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| GWF98_RS09650 | 2027654..2028523 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| GWF98_RS09655 | 2028540..2028878 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2029001..2029146 | - | 146 | - | - | Antitoxin |
| - | 2029037..2029139 | + | 103 | - | - | Toxin |
| GWF98_RS09660 | 2029514..2029657 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| GWF98_RS09665 | 2029762..2030730 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| GWF98_RS09670 | 2030887..2031540 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| GWF98_RS09675 | 2031537..2031728 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GWF98_RS09680 | 2031826..2032065 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GWF98_RS09685 | 2032181..2033614 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T158185 NZ_CP053862:2029037-2029139 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT158185 NZ_CP053862:c2029146-2029001 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
