Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3317060..3317331 | Replicon | chromosome |
| Accession | NZ_CP053855 | ||
| Organism | Escherichia coli strain 258E | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3317190..3317293 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3317060..3317331 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY99_RS15660 | 3313615..3314277 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HPY99_RS15665 | 3314301..3314957 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HPY99_RS15670 | 3315059..3315289 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HPY99_RS15675 | 3315428..3315802 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HPY99_RS15680 | 3315806..3316678 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HPY99_RS15685 | 3316691..3317032 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3317060..3317331 | - | 272 | - | - | Antitoxin |
| - | 3317190..3317293 | + | 104 | - | - | Toxin |
| HPY99_RS15690 | 3317428..3318084 | + | 657 | WP_124783504.1 | protein-serine/threonine phosphatase | - |
| HPY99_RS15695 | 3318085..3318276 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HPY99_RS15700 | 3318381..3318617 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HPY99_RS15705 | 3318735..3320174 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T158169 NZ_CP053855:3317190-3317293 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT158169 NZ_CP053855:c3317331-3317060 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
