Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1829117..1829388 | Replicon | chromosome |
| Accession | NZ_CP053852 | ||
| Organism | Escherichia coli strain CE1628 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1829248..1829350 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1829117..1829388 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPM96_RS08850 | 1825672..1826334 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HPM96_RS08855 | 1826358..1827014 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| HPM96_RS08860 | 1827116..1827346 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HPM96_RS08865 | 1827485..1827859 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| HPM96_RS08870 | 1827863..1828735 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| HPM96_RS08875 | 1828748..1829089 | + | 342 | WP_000976484.1 | YebY family protein | - |
| - | 1829117..1829388 | - | 272 | - | - | Antitoxin |
| - | 1829248..1829350 | + | 103 | - | - | Toxin |
| HPM96_RS08880 | 1829485..1830141 | + | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| HPM96_RS08885 | 1830142..1830333 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HPM96_RS08890 | 1830438..1830674 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HPM96_RS08895 | 1830792..1832231 | - | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T158141 NZ_CP053852:1829248-1829350 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT158141 NZ_CP053852:c1829388-1829117 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
