Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4731986..4732257 | Replicon | chromosome |
| Accession | NZ_CP053851 | ||
| Organism | Escherichia coli strain CE1803A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4732024..4732126 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4731986..4732257 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPM97_RS22230 | 4729143..4730582 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HPM97_RS22235 | 4730700..4730936 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HPM97_RS22240 | 4731041..4731232 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HPM97_RS22245 | 4731233..4731889 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 4731986..4732257 | + | 272 | - | - | Antitoxin |
| - | 4732024..4732126 | - | 103 | - | - | Toxin |
| HPM97_RS22250 | 4732285..4732626 | - | 342 | WP_000976484.1 | YebY family protein | - |
| HPM97_RS22255 | 4732639..4733511 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| HPM97_RS22260 | 4733515..4733889 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| HPM97_RS22265 | 4734028..4734258 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HPM97_RS22270 | 4734360..4735016 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| HPM97_RS22275 | 4735040..4735702 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T158125 NZ_CP053851:c4732126-4732024 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT158125 NZ_CP053851:4731986-4732257 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
