Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-RelB
Location 829294..829796 Replicon chromosome
Accession NZ_CP053835
Organism Arcobacter defluvii strain LMG 25694

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag ADFLV_RS04185 Protein ID WP_129010972.1
Coordinates 829542..829796 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag ADFLV_RS04180 Protein ID WP_129010973.1
Coordinates 829294..829545 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ADFLV_RS04150 824775..825818 + 1044 WP_129010979.1 EpsG family protein -
ADFLV_RS04155 825824..826813 + 990 WP_129010978.1 acyltransferase -
ADFLV_RS04160 826806..827705 + 900 WP_129010977.1 glycosyltransferase -
ADFLV_RS04165 827707..828594 + 888 WP_129010976.1 NAD-dependent epimerase/dehydratase family protein -
ADFLV_RS04170 828645..828887 + 243 WP_129010975.1 hypothetical protein -
ADFLV_RS04175 828888..829220 + 333 WP_129010974.1 type II toxin-antitoxin system PemK/MazF family toxin -
ADFLV_RS04180 829294..829545 + 252 WP_129010973.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
ADFLV_RS04185 829542..829796 + 255 WP_129010972.1 Txe/YoeB family addiction module toxin Toxin
ADFLV_RS04190 829796..830758 + 963 WP_129010971.1 glycosyltransferase family 4 protein -
ADFLV_RS04195 830758..831330 + 573 WP_129010970.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
ADFLV_RS04200 831340..833082 + 1743 WP_129010969.1 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) -
ADFLV_RS04205 833145..833543 + 399 WP_014473540.1 type II secretion system GspH family protein -
ADFLV_RS04210 833551..834354 - 804 WP_129010968.1 DNA ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10263.74 Da        Isoelectric Point: 7.1621

>T158101 WP_129010972.1 NZ_CP053835:829542-829796 [Arcobacter defluvii]
MNLIFSDKAWDEYMYWQQTDKQILKKINQLIRDIKREPFDGIGKPEPLKYELSGFWSRRISDEHRLVYEVSESYIAIVSC
RFHY

Download         Length: 255 bp

>T158101 NZ_CP069571:c1928921-1928544 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTTCTGTC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATCGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAATATTATCCTGGGTAAGCACCCGGAGGTGAAACAATGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9628.94 Da        Isoelectric Point: 7.0116

>AT158101 WP_129010973.1 NZ_CP053835:829294-829545 [Arcobacter defluvii]
MQVVSMTEARNNFKAIFDAVYNDNDEVIIHRKGKENVVVIPFSEYNSIKETNYLLSNKNNAKNLQESIKQLREGKVIQKE
LVE

Download         Length: 252 bp

>AT158101 NZ_CP069571:c1929378-1929010 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
ACAGCAATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References