Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2598216..2598487 | Replicon | chromosome |
| Accession | NZ_CP053787 | ||
| Organism | Escherichia coli isolate J31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2598254..2598357 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2598216..2598487 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQN81_RS12700 | 2595373..2596812 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HQN81_RS12705 | 2596930..2597166 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| HQN81_RS12710 | 2597271..2597462 | + | 192 | WP_001338167.1 | YebW family protein | - |
| HQN81_RS12715 | 2597463..2598119 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2598216..2598487 | + | 272 | - | - | Antitoxin |
| - | 2598254..2598357 | - | 104 | - | - | Toxin |
| HQN81_RS12720 | 2598515..2598856 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HQN81_RS12725 | 2598869..2599741 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HQN81_RS12730 | 2599745..2600119 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HQN81_RS12735 | 2600258..2600488 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HQN81_RS12740 | 2600590..2601246 | + | 657 | WP_097721639.1 | carbon-nitrogen hydrolase family protein | - |
| HQN81_RS12745 | 2601270..2601932 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157827 NZ_CP053787:c2598357-2598254 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT157827 NZ_CP053787:2598216-2598487 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
