Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029991..2030262 | Replicon | chromosome |
| Accession | NZ_CP053785 | ||
| Organism | Escherichia coli isolate 2-101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2030121..2030224 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029991..2030262 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQN80_RS09700 | 2026546..2027208 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HQN80_RS09705 | 2027232..2027888 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HQN80_RS09710 | 2027990..2028220 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HQN80_RS09715 | 2028359..2028733 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HQN80_RS09720 | 2028737..2029609 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HQN80_RS09725 | 2029622..2029963 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2029991..2030262 | - | 272 | - | - | Antitoxin |
| - | 2030121..2030224 | + | 104 | - | - | Toxin |
| HQN80_RS09730 | 2030359..2031015 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HQN80_RS09735 | 2031016..2031207 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HQN80_RS09740 | 2031312..2031548 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HQN80_RS09745 | 2031666..2033105 | - | 1440 | WP_172615598.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157803 NZ_CP053785:2030121-2030224 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT157803 NZ_CP053785:c2030262-2029991 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
