Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2156807..2157078 | Replicon | chromosome |
| Accession | NZ_CP053723 | ||
| Organism | Escherichia coli strain CP66-6_Sichuan | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2156937..2157040 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2156807..2157078 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP433_RS10405 | 2153363..2154025 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HP433_RS10410 | 2154048..2154704 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein | - |
| HP433_RS10415 | 2154806..2155036 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HP433_RS10420 | 2155175..2155549 | + | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| HP433_RS10425 | 2155553..2156425 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HP433_RS10430 | 2156438..2156779 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2156807..2157078 | - | 272 | - | - | Antitoxin |
| - | 2156937..2157040 | + | 104 | - | - | Toxin |
| HP433_RS10435 | 2157175..2157831 | + | 657 | WP_106464872.1 | protein-serine/threonine phosphatase | - |
| HP433_RS10440 | 2157832..2158023 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HP433_RS10445 | 2158128..2158364 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HP433_RS10450 | 2158482..2159921 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157557 NZ_CP053723:2156937-2157040 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT157557 NZ_CP053723:c2157078-2156807 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
