Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1905755..1906026 | Replicon | chromosome |
| Accession | NZ_CP053720 | ||
| Organism | Escherichia coli strain CP131_Sichuan | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1905885..1905988 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1905755..1906026 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP434_RS09125 | 1902310..1902972 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| HP434_RS09130 | 1902996..1903652 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HP434_RS09135 | 1903754..1903984 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HP434_RS09140 | 1904123..1904497 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HP434_RS09145 | 1904501..1905373 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HP434_RS09150 | 1905386..1905727 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1905755..1906026 | - | 272 | - | - | Antitoxin |
| - | 1905885..1905988 | + | 104 | - | - | Toxin |
| HP434_RS09155 | 1906123..1906779 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| HP434_RS09160 | 1906780..1906971 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HP434_RS09165 | 1907076..1907312 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HP434_RS09170 | 1907430..1908869 | - | 1440 | WP_172615287.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157530 NZ_CP053720:1905885-1905988 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT157530 NZ_CP053720:c1906026-1905755 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
