Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2701119..2701318 | Replicon | chromosome |
| Accession | NZ_CP053643 | ||
| Organism | Enterobacter hormaechei strain Eh65 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2701122..2701225 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2701119..2701318 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPC69_RS12990 (HPC69_12940) | 2697377..2698825 | + | 1449 | WP_195206357.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HPC69_RS12995 (HPC69_12945) | 2698932..2699171 | + | 240 | WP_003859885.1 | YebV family protein | - |
| HPC69_RS13000 (HPC69_12950) | 2699206..2699850 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| HPC69_RS13005 (HPC69_12955) | 2700018..2700998 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| HPC69_RS13010 (HPC69_12960) | 2701044..2701241 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2701119..2701318 | + | 200 | - | - | Antitoxin |
| - | 2701122..2701225 | - | 104 | - | - | Toxin |
| HPC69_RS13015 (HPC69_12965) | 2701367..2701705 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HPC69_RS13020 (HPC69_12970) | 2701722..2702591 | - | 870 | WP_003859786.1 | copper homeostasis membrane protein CopD | - |
| HPC69_RS13025 (HPC69_12975) | 2702593..2702964 | - | 372 | WP_003859785.1 | CopC domain-containing protein YobA | - |
| HPC69_RS13030 (HPC69_12980) | 2703102..2703332 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HPC69_RS13035 (HPC69_12985) | 2703444..2704094 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| HPC69_RS13040 (HPC69_12990) | 2704119..2704781 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157327 NZ_CP053643:c2701225-2701122 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT157327 NZ_CP053643:2701119-2701318 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
