Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014279..2014550 | Replicon | chromosome |
| Accession | NZ_CP053604 | ||
| Organism | Escherichia coli strain NEB10-beta | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014317..2014420 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014279..2014550 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO394_RS09885 | 2011436..2012875 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HO394_RS09890 | 2012993..2013229 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HO394_RS09895 | 2013334..2013525 | + | 192 | WP_000457842.1 | YebW family protein | - |
| HO394_RS09900 | 2013526..2014182 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2014279..2014550 | + | 272 | - | - | Antitoxin |
| - | 2014317..2014420 | - | 104 | - | - | Toxin |
| HO394_RS09905 | 2014578..2014919 | - | 342 | WP_000976476.1 | YebY family protein | - |
| HO394_RS09910 | 2014932..2015804 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HO394_RS09915 | 2015808..2016182 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HO394_RS09920 | 2016321..2016551 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HO394_RS09925 | 2016653..2017309 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HO394_RS09930 | 2017333..2017995 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T157103 NZ_CP053604:c2014420-2014317 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT157103 NZ_CP053604:2014279-2014550 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
