Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1839253..1839524 Replicon chromosome
Accession NZ_CP053601
Organism Escherichia coli BL21

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1839291..1839394 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1839253..1839524 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HO397_RS09085 1836410..1837849 + 1440 WP_000057022.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
HO397_RS09090 1837967..1838203 + 237 WP_001295499.1 DUF1480 family protein -
HO397_RS09095 1838308..1838499 + 192 WP_001296140.1 YebW family protein -
HO397_RS09100 1838500..1839156 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 1839253..1839524 + 272 - - Antitoxin
- 1839291..1839394 - 104 - - Toxin
HO397_RS09105 1839551..1839892 - 342 WP_000976472.1 YebY family protein -
HO397_RS09110 1839905..1840777 - 873 WP_000879293.1 copper homeostasis membrane protein CopD -
HO397_RS09115 1840781..1841155 - 375 WP_000168747.1 CopC domain-containing protein YobA -
HO397_RS09120 1841294..1841524 + 231 WP_000916763.1 DNA polymerase III subunit theta -
HO397_RS09125 1841626..1842282 + 657 WP_000011657.1 carbon-nitrogen hydrolase family protein -
HO397_RS09130 1842306..1842968 + 663 WP_000944245.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T157009 NZ_CP053601:c1839394-1839291 [Escherichia coli BL21]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT157009 NZ_CP053601:1839253-1839524 [Escherichia coli BL21]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References