Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2566255..2566526 | Replicon | chromosome |
| Accession | NZ_CP053592 | ||
| Organism | Escherichia coli strain NEBExpress_Iq | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2566385..2566488 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2566255..2566526 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO403_RS12085 | 2562811..2563473 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| HO403_RS12090 | 2563497..2564153 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| HO403_RS12095 | 2564255..2564485 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HO403_RS12100 | 2564624..2564998 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HO403_RS12105 | 2565002..2565874 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| HO403_RS12110 | 2565887..2566228 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2566255..2566526 | - | 272 | - | - | Antitoxin |
| - | 2566385..2566488 | + | 104 | - | - | Toxin |
| HO403_RS12115 | 2566623..2567279 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HO403_RS12120 | 2567280..2567471 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HO403_RS12125 | 2567576..2567812 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HO403_RS12130 | 2567930..2569369 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156896 NZ_CP053592:2566385-2566488 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156896 NZ_CP053592:c2566526-2566255 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
