Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2863936..2864079 | Replicon | chromosome |
| Accession | NZ_CP053573 | ||
| Organism | Citrobacter sp. TSA-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2863941..2864044 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2863936..2864079 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF677_RS13665 | 2859506..2860987 | + | 1482 | WP_141244090.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HF677_RS13670 | 2861088..2861324 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HF677_RS13675 | 2861427..2861618 | + | 192 | WP_016152779.1 | YebW family protein | - |
| HF677_RS13680 | 2861619..2862260 | - | 642 | WP_080858674.1 | protein-serine/threonine phosphatase | - |
| HF677_RS13685 | 2862338..2863618 | - | 1281 | WP_080858673.1 | hypothetical protein | - |
| - | 2863936..2864079 | + | 144 | - | - | Antitoxin |
| - | 2863941..2864044 | - | 104 | - | - | Toxin |
| HF677_RS13690 | 2864199..2864537 | - | 339 | WP_003833793.1 | YebY family protein | - |
| HF677_RS13695 | 2864558..2865430 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| HF677_RS13700 | 2865434..2865808 | - | 375 | WP_080858671.1 | CopC domain-containing protein YobA | - |
| HF677_RS13705 | 2865952..2866182 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HF677_RS13710 | 2866289..2866945 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| HF677_RS13715 | 2866969..2867631 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156870 NZ_CP053573:c2864044-2863941 [Citrobacter sp. TSA-1]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT156870 NZ_CP053573:2863936-2864079 [Citrobacter sp. TSA-1]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
