Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3661691..3661838 | Replicon | chromosome |
| Accession | NZ_CP053417 | ||
| Organism | Salmonella bongori strain 92-0238 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3661729..3661832 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3661691..3661838 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBX32_RS16925 | 3658123..3658812 | - | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
| CBX32_RS16930 | 3658836..3659492 | - | 657 | WP_171923346.1 | carbon-nitrogen hydrolase family protein | - |
| CBX32_RS16935 | 3659600..3659830 | - | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| CBX32_RS16940 | 3659968..3660342 | + | 375 | WP_171923347.1 | CopC domain-containing protein YobA | - |
| CBX32_RS16945 | 3660343..3661217 | + | 875 | Protein_3281 | copper homeostasis membrane protein CopD | - |
| CBX32_RS16950 | 3661234..3661584 | + | 351 | WP_171923348.1 | DUF2511 domain-containing protein | - |
| - | 3661691..3661838 | - | 148 | - | - | Antitoxin |
| - | 3661729..3661832 | + | 104 | - | - | Toxin |
| CBX32_RS16955 | 3662117..3663259 | - | 1143 | WP_079772755.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| CBX32_RS16960 | 3663851..3664327 | - | 477 | WP_171923349.1 | hypothetical protein | - |
| CBX32_RS16965 | 3664953..3665684 | + | 732 | WP_171923350.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156788 NZ_CP053417:3661729-3661832 [Salmonella bongori]
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT156788 NZ_CP053417:c3661838-3661691 [Salmonella bongori]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
