Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4467547..4467695 | Replicon | chromosome |
| Accession | NZ_CP053416 | ||
| Organism | Salmonella bongori strain 85-0051 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4467554..4467657 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4467547..4467695 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBY01_RS20840 | 4463717..4464439 | - | 723 | WP_079794699.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
| CBY01_RS20845 | 4465065..4465541 | + | 477 | WP_079772754.1 | hypothetical protein | - |
| CBY01_RS20850 | 4466127..4467269 | + | 1143 | WP_079794698.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| - | 4467547..4467695 | + | 149 | - | - | Antitoxin |
| - | 4467554..4467657 | - | 104 | - | - | Toxin |
| CBY01_RS20855 | 4467801..4468151 | - | 351 | WP_079772756.1 | YebY family protein | - |
| CBY01_RS20860 | 4468168..4469043 | - | 876 | WP_079794697.1 | copper homeostasis membrane protein CopD | - |
| CBY01_RS20865 | 4469044..4469418 | - | 375 | WP_000885911.1 | CopC domain-containing protein YobA | - |
| CBY01_RS20870 | 4469556..4469786 | + | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| CBY01_RS20875 | 4469894..4470550 | + | 657 | WP_079794696.1 | carbon-nitrogen hydrolase family protein | - |
| CBY01_RS20880 | 4470574..4471263 | + | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156776 NZ_CP053416:c4467657-4467554 [Salmonella bongori]
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 149 bp
>AT156776 NZ_CP053416:4467547-4467695 [Salmonella bongori]
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
