Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3379181..3379323 | Replicon | chromosome |
| Accession | NZ_CP053398 | ||
| Organism | Serratia plymuthica strain C-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3379183..3379279 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3379181..3379323 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HL670_RS15300 | 3374394..3374489 | - | 96 | Protein_3016 | IS1 family transposase | - |
| HL670_RS15305 | 3374723..3376675 | + | 1953 | WP_062792777.1 | TonB-dependent receptor | - |
| HL670_RS15310 | 3376672..3378003 | - | 1332 | WP_006324743.1 | HAMP domain-containing protein | - |
| HL670_RS15315 | 3378033..3378767 | - | 735 | WP_086016608.1 | response regulator transcription factor | - |
| - | 3379181..3379323 | + | 143 | - | - | Antitoxin |
| - | 3379183..3379279 | - | 97 | - | - | Toxin |
| HL670_RS15320 | 3379421..3379762 | - | 342 | WP_004943126.1 | YebY family protein | - |
| HL670_RS15325 | 3379832..3380713 | - | 882 | WP_062792779.1 | copper homeostasis membrane protein CopD | - |
| HL670_RS15330 | 3380717..3381100 | - | 384 | WP_004943122.1 | CopC domain-containing protein YobA | - |
| HL670_RS15335 | 3381406..3381924 | - | 519 | WP_004943119.1 | non-heme ferritin | - |
| HL670_RS15340 | 3382299..3382529 | + | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| HL670_RS15345 | 3382560..3383513 | - | 954 | WP_006324738.1 | prolyl aminopeptidase | - |
| HL670_RS15350 | 3383682..3384107 | - | 426 | WP_004943113.1 | TraR/DksA C4-type zinc finger protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T156760 NZ_CP053398:c3379279-3379183 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 143 bp
>AT156760 NZ_CP053398:3379181-3379323 [Serratia plymuthica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
