Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1057539..1057684 | Replicon | chromosome |
| Accession | NZ_CP053364 | ||
| Organism | Klebsiella pneumoniae strain BA2275 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1057546..1057648 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1057539..1057684 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5707_RS05315 | 1053070..1054503 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C5707_RS05320 | 1054619..1054858 | + | 240 | WP_002911393.1 | YebV family protein | - |
| C5707_RS05325 | 1054956..1055147 | + | 192 | WP_002911395.1 | YebW family protein | - |
| C5707_RS05330 | 1055144..1055797 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| C5707_RS05335 | 1055954..1056922 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C5707_RS05340 | 1057027..1057170 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1057539..1057684 | + | 146 | - | - | Antitoxin |
| - | 1057546..1057648 | - | 103 | - | - | Toxin |
| C5707_RS05345 | 1057807..1058145 | - | 339 | WP_002911404.1 | YebY family protein | - |
| C5707_RS05350 | 1058162..1059031 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| C5707_RS05355 | 1059035..1059409 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C5707_RS05360 | 1059522..1059752 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C5707_RS05365 | 1059831..1060490 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C5707_RS05370 | 1060494..1062554 | - | 2061 | WP_048978170.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T156692 NZ_CP053364:c1057648-1057546 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT156692 NZ_CP053364:1057539-1057684 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
