Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1944310..1944455 | Replicon | chromosome |
| Accession | NZ_CP053358 | ||
| Organism | Klebsiella pneumoniae strain EGKP6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1944346..1944448 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1944310..1944455 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMI21_RS09400 | 1939440..1941500 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HMI21_RS09405 | 1941504..1942163 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HMI21_RS09410 | 1942242..1942472 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HMI21_RS09415 | 1942585..1942959 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HMI21_RS09420 | 1942963..1943832 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HMI21_RS09425 | 1943849..1944187 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1944310..1944455 | - | 146 | - | - | Antitoxin |
| - | 1944346..1944448 | + | 103 | - | - | Toxin |
| HMI21_RS09430 | 1944823..1944966 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HMI21_RS09435 | 1945071..1946039 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HMI21_RS09440 | 1946196..1946849 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| HMI21_RS09445 | 1946846..1947037 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HMI21_RS09450 | 1947135..1947374 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HMI21_RS09455 | 1947490..1948923 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T156673 NZ_CP053358:1944346-1944448 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT156673 NZ_CP053358:c1944455-1944310 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
