Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2065504..2065648 | Replicon | chromosome |
| Accession | NZ_CP053286 | ||
| Organism | Serratia marcescens strain FZSF02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2065548..2065644 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2065504..2065648 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMI62_RS09900 | 2060771..2061166 | + | 396 | WP_171403417.1 | RidA family protein | - |
| HMI62_RS09905 | 2061323..2062276 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| HMI62_RS09910 | 2062308..2062538 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| HMI62_RS09915 | 2062883..2063401 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| HMI62_RS09920 | 2063695..2064111 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| HMI62_RS09925 | 2064114..2064995 | + | 882 | WP_171403418.1 | copper homeostasis membrane protein CopD | - |
| HMI62_RS09930 | 2065065..2065406 | + | 342 | WP_004940890.1 | YebY family protein | - |
| - | 2065504..2065648 | - | 145 | - | - | Antitoxin |
| - | 2065548..2065644 | + | 97 | - | - | Toxin |
| HMI62_RS09935 | 2065723..2066805 | - | 1083 | WP_171403419.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HMI62_RS09940 | 2066780..2067052 | - | 273 | WP_171403420.1 | excisionase | - |
| HMI62_RS09945 | 2067128..2067631 | - | 504 | WP_060444327.1 | siphovirus Gp157 family protein | - |
| HMI62_RS09950 | 2067628..2069754 | - | 2127 | WP_171403421.1 | hypothetical protein | - |
| HMI62_RS09955 | 2069769..2070089 | - | 321 | WP_171403422.1 | hypothetical protein | - |
| HMI62_RS09960 | 2070184..2070621 | - | 438 | WP_171403423.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2057485..2113597 | 56112 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T156559 NZ_CP053286:2065548-2065644 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT156559 NZ_CP053286:c2065648-2065504 [Serratia marcescens]
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
