Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2918264..2918535 | Replicon | chromosome |
| Accession | NZ_CP053284 | ||
| Organism | Escherichia coli strain SCU-104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2918302..2918405 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2918264..2918535 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ22_RS14240 | 2915421..2916860 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HHJ22_RS14245 | 2916978..2917214 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ22_RS14250 | 2917319..2917510 | + | 192 | WP_000457842.1 | YebW family protein | - |
| HHJ22_RS14255 | 2917511..2918167 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2918264..2918535 | + | 272 | - | - | Antitoxin |
| - | 2918302..2918405 | - | 104 | - | - | Toxin |
| HHJ22_RS14260 | 2918563..2918904 | - | 342 | WP_000976476.1 | YebY family protein | - |
| HHJ22_RS14265 | 2918917..2919789 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| HHJ22_RS14270 | 2919793..2920167 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ22_RS14275 | 2920306..2920536 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ22_RS14280 | 2920638..2921294 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ22_RS14285 | 2921318..2921980 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156539 NZ_CP053284:c2918405-2918302 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156539 NZ_CP053284:2918264-2918535 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCATGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCATGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
