Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1949518..1949789 | Replicon | chromosome |
| Accession | NZ_CP053259 | ||
| Organism | Escherichia coli strain GF3-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949648..1949751 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1949518..1949789 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HLY12_RS09145 | 1946073..1946735 | - | 663 | WP_171284190.1 | exodeoxyribonuclease X | - |
| HLY12_RS09150 | 1946759..1947415 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| HLY12_RS09155 | 1947517..1947747 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HLY12_RS09160 | 1947886..1948260 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| HLY12_RS09165 | 1948264..1949136 | + | 873 | WP_044191540.1 | copper homeostasis membrane protein CopD | - |
| HLY12_RS09170 | 1949149..1949490 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1949518..1949789 | - | 272 | - | - | Antitoxin |
| - | 1949648..1949751 | + | 104 | - | - | Toxin |
| HLY12_RS09175 | 1949886..1950542 | + | 657 | WP_001718411.1 | protein-serine/threonine phosphatase | - |
| HLY12_RS09180 | 1950543..1950734 | - | 192 | WP_001313035.1 | YebW family protein | - |
| HLY12_RS09185 | 1950839..1951075 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HLY12_RS09190 | 1951193..1952632 | - | 1440 | WP_001718410.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156478 NZ_CP053259:1949648-1949751 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156478 NZ_CP053259:c1949789-1949518 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
