Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3365248..3365516 | Replicon | chromosome |
| Accession | NZ_CP053251 | ||
| Organism | Escherichia coli strain SCU-204 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3365286..3365388 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3365248..3365516 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ42_RS16435 | 3362404..3363843 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HHJ42_RS16440 | 3363962..3364198 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ42_RS16445 | 3364303..3364494 | + | 192 | WP_024186842.1 | YebW family protein | - |
| HHJ42_RS16450 | 3364495..3365151 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 3365248..3365516 | + | 269 | - | - | Antitoxin |
| - | 3365286..3365388 | - | 103 | - | - | Toxin |
| HHJ42_RS16455 | 3365546..3365887 | - | 342 | WP_000984819.1 | YebY family protein | - |
| HHJ42_RS16460 | 3365900..3366772 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| HHJ42_RS16465 | 3366776..3367150 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ42_RS16470 | 3367289..3367519 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ42_RS16475 | 3367621..3368277 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ42_RS16480 | 3368301..3368963 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T156429 NZ_CP053251:c3365388-3365286 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT156429 NZ_CP053251:3365248-3365516 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
