Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4461649..4461920 | Replicon | chromosome |
| Accession | NZ_CP053247 | ||
| Organism | Escherichia coli strain SCU-482 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4461779..4461882 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4461649..4461920 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ51_RS21470 | 4458204..4458866 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ51_RS21475 | 4458890..4459546 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ51_RS21480 | 4459648..4459878 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ51_RS21485 | 4460017..4460391 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| HHJ51_RS21490 | 4460395..4461267 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| HHJ51_RS21495 | 4461280..4461621 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 4461649..4461920 | - | 272 | - | - | Antitoxin |
| - | 4461779..4461882 | + | 104 | - | - | Toxin |
| HHJ51_RS21500 | 4462017..4462673 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HHJ51_RS21505 | 4462674..4462865 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ51_RS21510 | 4462970..4463206 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ51_RS21515 | 4463324..4464763 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156404 NZ_CP053247:4461779-4461882 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156404 NZ_CP053247:c4461920-4461649 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
