Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4480639..4480907 | Replicon | chromosome |
| Accession | NZ_CP053245 | ||
| Organism | Escherichia coli strain SCU-485 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4480677..4480779 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4480639..4480907 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ54_RS21415 | 4477796..4479235 | + | 1440 | WP_001313925.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HHJ54_RS21420 | 4479353..4479589 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ54_RS21425 | 4479694..4479885 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ54_RS21430 | 4479886..4480542 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 4480639..4480907 | + | 269 | - | - | Antitoxin |
| - | 4480677..4480779 | - | 103 | - | - | Toxin |
| HHJ54_RS21435 | 4480937..4481278 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HHJ54_RS21440 | 4481291..4482163 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| HHJ54_RS21445 | 4482167..4482541 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ54_RS21450 | 4482680..4482910 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ54_RS21455 | 4483012..4483668 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ54_RS21460 | 4483691..4484353 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T156377 NZ_CP053245:c4480779-4480677 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT156377 NZ_CP053245:4480639-4480907 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
