Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1170652..1170923 | Replicon | chromosome |
| Accession | NZ_CP053234 | ||
| Organism | Escherichia coli strain SCU-106 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1170782..1170885 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1170652..1170923 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ24_RS05945 | 1167207..1167869 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ24_RS05950 | 1167893..1168549 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ24_RS05955 | 1168651..1168881 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ24_RS05960 | 1169020..1169394 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HHJ24_RS05965 | 1169398..1170270 | + | 873 | WP_045171712.1 | copper homeostasis membrane protein CopD | - |
| HHJ24_RS05970 | 1170283..1170624 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1170652..1170923 | - | 272 | - | - | Antitoxin |
| - | 1170782..1170885 | + | 104 | - | - | Toxin |
| HHJ24_RS05975 | 1171020..1171676 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HHJ24_RS05980 | 1171677..1171868 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ24_RS05985 | 1171973..1172209 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ24_RS05990 | 1172327..1173766 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156327 NZ_CP053234:1170782-1170885 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156327 NZ_CP053234:c1170923-1170652 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
